prada an open source calcium | jpits30/NeuronActivityTool prada an open source calcium An open source tool for automatic spatiotemporal assessment of calcium transients and local ‘signal-close-to-noise’ activity in calcium imaging data. Juan Prada, Manju Sasi2, Corinna Martin2, Sibylle Jablonka2, Thomas Dandekar1, and Robert Blum2. Department of Bioinformatics, University of Würzburg, Würzburg, Germany.
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0 · jpits30/NeuronActivityTool
1 · Supplementary material: User manual An open source tool
2 · An open source tool for automatic spatiotemporal assessment of
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jpits30/NeuronActivityTool
We developed an open source bioinformatics tool for an unbiased assessment of calcium signals in x,y-t imaging series. The tool bases its algorithm on a continuous wavelet transform-guided peak detection to identify calcium signal candidates.
This open source tool automatically extracts, counts, and localizes calcium signals in the whole .
An open source tool for automatic spatiotemporal assessment of calcium transients and local .
We developed an open source bioinformatics tool for an unbiased assessment of calcium signals in x,y-t imaging series. The tool bases its algorithm on a continuous wavelet transform-guided peak detection to identify calcium signal candidates.This open source tool automatically extracts, counts, and localizes calcium signals in the whole x,y-t image series. The tool is highly sensitive for local, specific activity and challenges the "all is just noise" hypothesis.An open source tool for automatic spatiotemporal assessment of calcium transients and local ‘signal-close-to-noise’ activity in calcium imaging data. Juan Prada, Manju Sasi2, Corinna Martin2, Sibylle Jablonka2, Thomas Dandekar1, and Robert Blum2. Department of Bioinformatics, University of Würzburg, Würzburg, Germany.
We developed this open source tool to automatically extract, count, and localize calcium signals from the whole x,y-t image series. The tool is useful for an unbiased comparison of activity states of neurons, helps to assess local calcium transients, and even visualizes local homeostatic calcium activity. We developed an open source bioinformatics tool for an unbiased assessment of calcium signals in x,y-t imaging series. The tool bases its algorithm on a continuous wavelet transform-guided.
An open source tool for automatic spatiotemporal assessment of calcium transients and local ‘signal-close-to-noise’ activity in calcium imaging dataPrada et al. [52] developed an open-source tool for automatic extraction, counting and localization of calcium signals from calcium imaging stacks based on continuous wavelet transform-guided. We developed an open source bioinformatics tool for an unbiased assessment of calcium signals in x,y-t imaging series. The tool bases its algorithm on a continuous wavelet transform-guided peak detection to identify calcium signal candidates.Prada, J., Sasi, M., Martin, C., Jablonka, S., Dandekar, T., & Blum, R. (2018). An open source tool for automatic spatiotemporal assessment of calcium transients and local “signal-close-to-noise” activity in calcium imaging data. PLOS Computational Biology, 14(3), e1006054. doi:10.1371/journal.pcbi.1006054
An open source tool for automatic spatiotemporal assessment of calcium transients and local 'signal-close-to-noise' activity in calcium imaging data. Prada J, Sasi M, Martin C, Jablonka S, Dandekar T, Blum R. PLoS Comput Biol. 2018 Mar 30;14(3):e1006054. doi: 10.1371/journal.pcbi.1006054. eCollection 2018 Mar. PMID: 29601577. We developed an open source bioinformatics tool for an unbiased assessment of calcium signals in x,y-t imaging series. The tool bases its algorithm on a continuous wavelet transform-guided peak detection to identify calcium signal candidates.This open source tool automatically extracts, counts, and localizes calcium signals in the whole x,y-t image series. The tool is highly sensitive for local, specific activity and challenges the "all is just noise" hypothesis.An open source tool for automatic spatiotemporal assessment of calcium transients and local ‘signal-close-to-noise’ activity in calcium imaging data. Juan Prada, Manju Sasi2, Corinna Martin2, Sibylle Jablonka2, Thomas Dandekar1, and Robert Blum2. Department of Bioinformatics, University of Würzburg, Würzburg, Germany.
Supplementary material: User manual An open source tool
An open source tool for automatic spatiotemporal assessment of
We developed this open source tool to automatically extract, count, and localize calcium signals from the whole x,y-t image series. The tool is useful for an unbiased comparison of activity states of neurons, helps to assess local calcium transients, and even visualizes local homeostatic calcium activity. We developed an open source bioinformatics tool for an unbiased assessment of calcium signals in x,y-t imaging series. The tool bases its algorithm on a continuous wavelet transform-guided.An open source tool for automatic spatiotemporal assessment of calcium transients and local ‘signal-close-to-noise’ activity in calcium imaging data
Prada et al. [52] developed an open-source tool for automatic extraction, counting and localization of calcium signals from calcium imaging stacks based on continuous wavelet transform-guided.
We developed an open source bioinformatics tool for an unbiased assessment of calcium signals in x,y-t imaging series. The tool bases its algorithm on a continuous wavelet transform-guided peak detection to identify calcium signal candidates.Prada, J., Sasi, M., Martin, C., Jablonka, S., Dandekar, T., & Blum, R. (2018). An open source tool for automatic spatiotemporal assessment of calcium transients and local “signal-close-to-noise” activity in calcium imaging data. PLOS Computational Biology, 14(3), e1006054. doi:10.1371/journal.pcbi.1006054
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prada an open source calcium|jpits30/NeuronActivityTool
